snpinfo: Details of SNPs from the simulated genotype matrix X used to...
In jennasimit/flashfm: flexible and shared information fine-mapping
snpinfo R Documentation
Details of SNPs from the simulated genotype matrix X used to generate two traits
Description
This is a data.frame with 334 rows, each corresponding to a SNP, and with
4 columns: ID=rs ID; pos=base-pair position; allele0=non-reference allele; allele1=reference allele
For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA,
we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data
using HapGen2. We selected a random sample of 2000 from this population and only retained
the 334 variants with MAF > 0.005 in this sample.
Usage
snpinfo
Format
An object of class data.frame with 336 rows and 4 columns.
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| snpinfo | R Documentation |
Details of SNPs from the simulated genotype matrix X used to generate two traits
Description
This is a data.frame with 334 rows, each corresponding to a SNP, and with 4 columns: ID=rs ID; pos=base-pair position; allele0=non-reference allele; allele1=reference allele For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA, we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data using HapGen2. We selected a random sample of 2000 from this population and only retained the 334 variants with MAF > 0.005 in this sample.
Usage
snpinfo
Format
An object of class data.frame with 336 rows and 4 columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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