kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances MSA2dist calculates pairwise IUPAC distances.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment GO Genetics Sequencing |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 1.11.1 |
| URL | https://gitlab.gwdg.de/mpievolbio-it/MSA2dist https://mpievolbio-it.pages.gwdg.de/MSA2dist/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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