README.md
deconvBench
The project on comparstive research of cell deconvolution methods
Overview
deconvBench is a R package used to assess the performance of diverse approaches evaluation of cell fraction estimation, and in total it has more than 30 different types of bioinformatics software.
Installation
To install the deconvBench, install from github using devtools
library(devtools)
install_github("libcell/deconvBench")
Or you can download the .ZIP file and unzip it.
install.packages("deconvBench", repos = NULL, type = "source")
# The "deconvBench" should be combined with the absolute path.
Usage
It’s hard to succinctly describe how deconvBench works because it embodies a deep philosophy of visualization.
!!!Note: after installation, you must download the whole database file (deconvBench.eg.sqlite, https://drive.google.com/file/d/1gw9C9KX0spPrd6d_CNLAqnZ5qDMbqrYo/view?usp=sharing; deconvBench.sc.sqlite, https://drive.google.com/file/d/1en-tQP_hJaCRCgFWBZPatpnuq9UEjFH_/view?usp=sharing) to replace the primary *.sqlite files in the directory deconvBench/inst/extdata/.
Contact email
Please don't hesitate to address comments/questions/suggestions regarding this R package to: Bo Li libcell@cqnu.edu.cn
