Prede: PREDE

In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation

PREDE

Description

PREDE

Usage

Prede(scdata, bulkdata, label, celltypenum, seed = NULL)

Arguments

scdata	single data with genes in rows and cells in columns.
bulkdata	A matrix with genes in rows and samples in columns.
label	The cell type label of single data.
celltypenum	Specify the range of underlying subpopulation number.
seed	the random seed.

Value

A data frame of Mixed cellular fractions.

Examples

Bulk <- Bulk_GSE60424
SC <- SC_GSE60424
Label <- Label_GSE60424$Label
res <- Prede(bulkdata = Bulk,
             scdata = SC,
             label = Label,
             celltypenum = 5,
             seed = 2022)

libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.