Timer: Deconvolution Methods of TIMER TICPE helps users to Estimate...
In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation
Timer R Documentation
Deconvolution Methods of TIMER
TICPE helps users to Estimate of cellular fractions by 23 cancer types gene-markers
from The Cancer Genome Atlas (TCGA).
for cell type deconvolution.
Description
Deconvolution Methods of TIMER
TICPE helps users to Estimate of cellular fractions by 23 cancer types gene-markers
from The Cancer Genome Atlas (TCGA).
for cell type deconvolution.
Usage
Timer(bulkdata, tumortype = "brca")
Arguments
bulkdata
A matrix with genes in rows and samples in columns.
tumortype
23 cancer types from The Cancer Genome Atlas (TCGA).
Value
Mixed cell composition estimation ratio data frame
Examples
Bulk <- Bulk_GSE60424
res <- Timer(bulkdata=Bulk,
tumor = TRUE,
tumortype = "brca")
libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.
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| Timer | R Documentation |
Deconvolution Methods of TIMER TICPE helps users to Estimate of cellular fractions by 23 cancer types gene-markers from The Cancer Genome Atlas (TCGA). for cell type deconvolution.
Description
Deconvolution Methods of TIMER TICPE helps users to Estimate of cellular fractions by 23 cancer types gene-markers from The Cancer Genome Atlas (TCGA). for cell type deconvolution.
Usage
Timer(bulkdata, tumortype = "brca")
Arguments
bulkdata |
A matrix with genes in rows and samples in columns. |
tumortype |
23 cancer types from The Cancer Genome Atlas (TCGA). |
Value
Mixed cell composition estimation ratio data frame
Examples
Bulk <- Bulk_GSE60424
res <- Timer(bulkdata=Bulk,
tumor = TRUE,
tumortype = "brca")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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