Cibersort: Main functions
In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation
Cibersort R Documentation
Main functions
Description
Main functions
Usage
Cibersort(bulkdata, signature, perm = 10, QN = TRUE)
Arguments
bulkdata
heterogenous mixed expression
signature
file path to gene expression from isolated cells
perm
Number of permutations
QN
Perform quantile normalization or not (TRUE/FALSE)
Examples
# Bulk <- Bulk_GSE60424
# res <- Cibersort(bulkdata = Bulk,
# signature = LM22,
# perm = 10,
# QN = TRUE)
libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.
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| Cibersort | R Documentation |
Main functions
Description
Main functions
Usage
Cibersort(bulkdata, signature, perm = 10, QN = TRUE)
Arguments
bulkdata |
heterogenous mixed expression |
signature |
file path to gene expression from isolated cells |
perm |
Number of permutations |
QN |
Perform quantile normalization or not (TRUE/FALSE) |
Examples
# Bulk <- Bulk_GSE60424 # res <- Cibersort(bulkdata = Bulk, # signature = LM22, # perm = 10, # QN = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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