Autogenes: #' Autogenes
In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation
Autogenes R Documentation
#' Autogenes
Description
#' Autogenes
Usage
Autogenes(scdata, bulkdata, label, SubMethod = "nnls")
Arguments
scdata
single data with genes in rows and cells in columns.
bulkdata
A matrix with genes in rows and samples in columns.
label
The cell type label of single data.
SubMethod
nnls or nusvr.
Value
A data frame of Mixed cellular fractions.
Examples
# Bulk <- Bulk_GSE106898
# SC <- SC_GSE60424
# Label <- Label_GSE60424$Label
# res <- Autogenes(bulkdata = Bulk,
# scdata = SC,
# label = Label,
# SubMethod = "nnls")
libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| Autogenes | R Documentation |
#' Autogenes
Description
#' Autogenes
Usage
Autogenes(scdata, bulkdata, label, SubMethod = "nnls")
Arguments
scdata |
single data with genes in rows and cells in columns. |
bulkdata |
A matrix with genes in rows and samples in columns. |
label |
The cell type label of single data. |
SubMethod |
nnls or nusvr. |
Value
A data frame of Mixed cellular fractions.
Examples
# Bulk <- Bulk_GSE106898 # SC <- SC_GSE60424 # Label <- Label_GSE60424$Label # res <- Autogenes(bulkdata = Bulk, # scdata = SC, # label = Label, # SubMethod = "nnls")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.