LM22: A validated leukocyte gene signature matrix, LM22

In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation

A validated leukocyte gene signature matrix, LM22

Description

A dataset containing 547-gene expression values in 22 functionally defined human hematopoietic subsets. The variables are as follows:

Usage

LM22

Format

A data frame with 547 rows and 22 variables:

B cells naive

A naive B cell is a B cell that has not been exposed to an antigen

B cells memory

B cell memory is generated upon a first pathogen encounter and is carried by two distinct lineages: long-lived plasma cells that secrete protective antibodies for a lifetime and memory B cells that can elicit improved and enhanced responses upon new antigen challenges.

Plasma cells

To be supplemented

T cells CD8

To be supplemented

T cells CD4 naive

To be supplemented

T cells CD4 memory resting

To be supplemented

T cells CD4 memory activated

To be supplemented

T cells follicular helper

To be supplemented

T cells regulatory (Tregs)

To be supplemented

T cells gamma delta

To be supplemented

NK cells resting

To be supplemented

NK cells activated

To be supplemented

Monocytes

To be supplemented

Macrophages M0

To be supplemented

Macrophages M1

To be supplemented

Macrophages M2

To be supplemented

Dendritic cells resting

To be supplemented

Dendritic cells activated

To be supplemented

Mast cells resting

To be supplemented

Mast cells activated

To be supplemented

Eosinophils

To be supplemented

Neutrophils

To be supplemented

libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.