Nitumid: Deconvolution Methods NITUMID NITUMID helps users to Estimate...

In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation

Deconvolution Methods NITUMID NITUMID helps users to Estimate of cellular fractions.

Description

Deconvolution Methods NITUMID NITUMID helps users to Estimate of cellular fractions.

Usage

Nitumid(
  bulkdata,
  signature = NULL,
  allmarkers = NITUMID::signature_marker_melanoma$gene_symbol,
  if.bulk = TRUE
)

Arguments

bulkdata	A matrix with genes in rows and samples in columns.
signature	A data-frame containing signatures of different cell types.
allmarkers	some of gene factors
if.bulk	Default is Ture

Value

A data frame of Mixed cellular fractions.

Examples

Bulk <- Bulk_GSE60424
res <- Nitumid(bulkdata = Bulk)

libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.