Consensustme | R Documentation |
ConsensusTME
Consensustme(bulkdata, tumortype = "OV", SubMethod = "ssgsea")
bulkdata |
A matrix with genes in rows and samples in columns. |
tumortype |
It isone of “ACC”, “BLCA”, “BRCA”, “CESC”, “CHOL”, “COAD”, “DLBC”, “ESCA”, “GBM”, “HNSC”, “KICH”, “KIRC”, “KIRP”, “LGG”, “LIHC”, “LUAD”, “LUSC”, “MESO”, “OV”, “PAAD”, “PCPG”, “PRAD”, “READ”, “SARC”, “SKCM”, “STAD”, “TGCT”, “THCA”, “THYM”, “UCEC”, “UCS”, “UVM”, “Unfiltered”. |
SubMethod |
It is one of “ssgsea”, “gsva”, “plage”, “zscore”, “singScore”. |
A data frame of Mixed cellular fractions.
Bulk <- Bulk_GSE60424 res <- Consensustme(bulkdata = Bulk, tumortype = "OV", SubMethod = "ssgsea")
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