Consensustme: ConsensusTME
| Consensustme | R Documentation |
ConsensusTME
Description
ConsensusTME
Usage
Consensustme(bulkdata, tumortype = "OV", SubMethod = "ssgsea")
Arguments
bulkdata |
A matrix with genes in rows and samples in columns. |
tumortype |
It isone of “ACC”, “BLCA”, “BRCA”, “CESC”, “CHOL”, “COAD”, “DLBC”, “ESCA”, “GBM”, “HNSC”, “KICH”, “KIRC”, “KIRP”, “LGG”, “LIHC”, “LUAD”, “LUSC”, “MESO”, “OV”, “PAAD”, “PCPG”, “PRAD”, “READ”, “SARC”, “SKCM”, “STAD”, “TGCT”, “THCA”, “THYM”, “UCEC”, “UCS”, “UVM”, “Unfiltered”. |
SubMethod |
It is one of “ssgsea”, “gsva”, “plage”, “zscore”, “singScore”. |
Value
A data frame of Mixed cellular fractions.
Examples
Bulk <- Bulk_GSE60424
res <- Consensustme(bulkdata = Bulk,
tumortype = "OV",
SubMethod = "ssgsea")
