MCPcounter: Enrichment score Methods of MCPcounter
In libcell/deconvBench: A tool for approaches evaluation of cell fraction estimation
Mcpcounter R Documentation
Enrichment score Methods of MCPcounter
Description
Enrichment score Methods of MCPcounter
Usage
Mcpcounter(
bulkdata,
signature = NULL,
featuresType = c("affy133P2_probesets", "HUGO_symbols", "ENTREZ_ID", "ENSEMBL_ID")[2]
)
Arguments
bulkdata
A matrix with genes in rows and samples in columns.
signature
A data-frame containing signatures of different cell types.
and default is NULL.
featuresType
gene ID,it can be "affy133P2_probesets",
"HUGO_symbols","ENTREZ_ID"or "ENSEMBL_ID".
Value
A data frame of Mixed cellular Enrichment score.
Examples
Bulk <- Bulk_GSE60424
res <- Mcpcounter(bulkdata = Bulk)
libcell/deconvBench documentation built on Sept. 24, 2022, 12:36 p.m.
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| Mcpcounter | R Documentation |
Enrichment score Methods of MCPcounter
Description
Enrichment score Methods of MCPcounter
Usage
Mcpcounter(
bulkdata,
signature = NULL,
featuresType = c("affy133P2_probesets", "HUGO_symbols", "ENTREZ_ID", "ENSEMBL_ID")[2]
)
Arguments
bulkdata |
A matrix with genes in rows and samples in columns. |
signature |
A data-frame containing signatures of different cell types. and default is NULL. |
featuresType |
gene ID,it can be "affy133P2_probesets", "HUGO_symbols","ENTREZ_ID"or "ENSEMBL_ID". |
Value
A data frame of Mixed cellular Enrichment score.
Examples
Bulk <- Bulk_GSE60424 res <- Mcpcounter(bulkdata = Bulk)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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