Files in mariiabilous/SuperCellBM

R/GO_match_top_cor_genes.R R/SCimplify2metacell.R R/SCimplify2random.R R/SCimplify2subsampling.R R/all_gene_cor.R R/annotate_supercells_to_clusters.R R/bind_supercell_like_structure.R R/build_MC.R R/compute_alternative_SC.R R/compute_singlecell_silh.R R/compute_supercells.R R/compute_supercells_DEA.R R/compute_supercells_GE.R R/compute_supercells_PCA.R R/compute_supercells_clustering.R R/compute_supercells_metacells.R R/diag_consistency_mtrx.R R/get_GO_df.R R/get_SC.R R/init_mc.R R/mc_build_cgraph.R R/plot_legend_cell_type.R R/plot_optimal_number_of_clusters.R R/plot_supercell_coverage_rate.R R/plot_supercell_size_distribution.R R/rank_gene_gene_cor.R R/remove_mc_fields.R R/saveplot.R README.Rmd README.md examples/Tcells.R examples/Tcells.Rmd examples/config/Tcells_config.R examples/config/Tcells_load_data.R examples/config/cell_lines_config.R examples/config/config_color.R man/GO_match_summary.Rd man/GO_match_top_cor_genes.Rd man/Graph_to_igraph.Rd man/SCBM_saveplot.Rd man/SC_from_membership.Rd man/SCimple2Metacell.Rd man/SCimple2Random.Rd man/SCimple2Subsampling.Rd man/add_cor_pval.Rd man/all_gene_cor.Rd man/all_gene_cor_with_pval.Rd man/annotate_supercells_to_cluster.Rd man/bind_by_graining_level.Rd man/bind_by_method.Rd man/bind_by_seed.Rd man/build_MC.Rd man/compute_DEA_GT_bool.Rd man/compute_alternative_SC.Rd man/compute_alternative_clustering.Rd man/compute_consistency_of_supercell_DEA.Rd man/compute_consistency_of_supercell_clustering.Rd man/compute_consistency_of_supercell_optimal_clustering.Rd man/compute_singglecell_DEA.Rd man/compute_singlecell_silh.Rd man/compute_singlecell_unweighted_clustering.Rd man/compute_supercells.Rd man/compute_supercells_DEA.Rd man/compute_supercells_GE.Rd man/compute_supercells_PCA.Rd man/compute_supercells_additional_gammas.Rd man/compute_supercells_additional_seeds.Rd man/compute_supercells_clustering.Rd man/compute_supercells_metacells.Rd man/compute_supercells_metacells_with_min_mc_size.Rd man/compute_supercells_silhouette.Rd man/compute_supercells_unweighted_clustering.Rd man/diag_consistency_mtrx.Rd man/get_GO.Rd man/get_SC_by_gamma.Rd man/get_actual_gammas_metacell.Rd man/hello.Rd man/init_mc.Rd man/map_clustering_to_cell_type.Rd man/mc_build_cgraph.Rd man/mc_build_mc.Rd man/plot_DEA_consistency.Rd man/plot_GO_match_score.Rd man/plot_annotation_purity.Rd man/plot_argmax_silh.Rd man/plot_argmax_silh_alt_clusterings.Rd man/plot_clustering_consistency.Rd man/plot_legend_celltype.Rd man/plot_supercell_size_distribution.Rd man/rank_gene_gene_cor.Rd man/remove_mc_fields.Rd plots/save/ARI_clustering_hclust.pdf plots/save/ARI_clustering_hclust_errbar_extr.pdf plots/save/ARI_clustering_hclust_errbar_quartiles.pdf plots/save/ARI_clustering_hclust_errbar_sd.pdf plots/save/annotation_purity_cell_line.pdf