Description Usage Arguments Value
View source: R/compute_alternative_SC.R
Builds super-cell object from a single-cell NW and a membership vector
1 2 3 4 5 6 7 8 9 | SC_from_membership(
sc.nw,
membership,
gname,
resolution = NULL,
N.comp = NULL,
genes.use = NULL,
return.singlecell.NW = FALSE
)
|
sc.nw |
igraph single-cell network |
membership |
super-cell membership vector |
gname |
graph name |
resolution |
clustering resolution (for louvain clustering) |
N.comp |
number (or vector) of principal components used to build super-cells |
genes.use |
genes used to build super-cells |
return.singlecell.NW |
whether to return single-cell network |
the same as SCimplify with an additional field - 'res' for the resolution usign in FindClusters to obtain super-cell membership
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