ISS_deg: Find differentially express (DE) gene by different methods
In mashranga/MolDia: Single cell In-Situ sequencing (ISS) data analysis
Description
Usage
Arguments
Note
Examples
Description
Find differentially express (DE) gene by different methods
Usage
1
Arguments
data
Input data matrix. Column is gene and row is cells.
DEGmethod
Methods to find DE genes.
Note
This function is in-complete and needs further development by adding
different methods of finding DE optimized for ISS data.
Examples
1
2
3
4
5
## Reading data
ex_data <- readISS(file = system.file("extdata", "Hypocampus_left.csv", package="MolDia"),
cellid = "CellId", centX = "centroid_x", centY = "centroid_y")
res <- ISS_deg (data = ex_data)
mashranga/MolDia documentation built on May 26, 2019, 9:36 a.m.
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Description Usage Arguments Note Examples
Description
Find differentially express (DE) gene by different methods
Usage
1 |
Arguments
data |
Input data matrix. Column is gene and row is cells. |
DEGmethod |
Methods to find DE genes. |
Note
This function is in-complete and needs further development by adding different methods of finding DE optimized for ISS data.
Examples
1 2 3 4 5 | ## Reading data
ex_data <- readISS(file = system.file("extdata", "Hypocampus_left.csv", package="MolDia"),
cellid = "CellId", centX = "centroid_x", centY = "centroid_y")
res <- ISS_deg (data = ex_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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