writeISS: Write ISS data in CSV formate

In mashranga/MolDia: Single cell In-Situ sequencing (ISS) data analysis

Description

Write ISS data in CSV formate.

Usage

writeISS(file, output = "", expr = TRUE, location = TRUE,
  cellid = "CellID", centX = "centroidX", centY = "centroidY",
  scientific = FALSE)

Arguments

file	File name in "MolDiaISS" class (Output of readISS).
output	A character string naming a file.
expr	Write expression data. TRUE or FALSE needed. Default is TRUE.
location	Write location data. TRUE or FALSE needed. Default is TRUE.
cellid	String to naming cell. Default is "CellID".
centX	Name of X co-ordinate in file. Default is "centroidX".
centY	Name of Y co-ordinate in file Default is "centroidY".
scientific	Fomate of location data. Either a logical specifying whether elements of a real or complex vector should be encoded in scientific format, or an integer. Default is FALSE.

Value

Output will be a CSV formated file.

Author(s)

Mohammad Tanvir Ahamed

Examples

##### Reading ISS data from CSV formate
data_1 <- readISS(file = system.file("extdata", "CellBlobs_QT_0.35.csv", package="MolDia"),
                  cellid = "CellID", centX = "centroidX", centY = "centroidY")
writeISS(file = data_1, output  = "test.csv", expr = F, location = T)

mashranga/MolDia documentation built on May 26, 2019, 9:36 a.m.