Description Usage Arguments Details Examples
View source: R/1.3_exportISS.R
Export ISS data to different formated file which are compitible for other software or R package.
1 |
file |
Input data in class MolDiaISS. Output of readISS. See details. |
toexport |
To which formate data will export. See details. |
At present only non-segmentated file (file class MolDiaISS_nonsegment)is supported for exporting file formate compitible with R package wholebrainsoftware.
toexport only support "WB" argument at this moment, which is compitible with wholebrainsoftware.
1 2 3 4 5 6 7 8 9 | ###### Reading non-segmentated file
mdata <- readISS(file = system.file("extdata", "nonSeg_QT_0.35_0_details.csv", package="MolDia"), segment = FALSE,
centX = "PosX", centY = "PosY", nogene = "NNNN", gene= c("Gdf7","WNT1","Pak3","Tfap2a"))
mdata_1 <- readISS(file = mdata, gene= c("Gdf7","WNT1","Pak3","Tfap2a"))
mdata_2 <- readISS(file = mdata, nogene = c("Gdf7","WNT1"))
mywb_1 <- exportISS(file = mdata_1, toexport= "WB")
mywb_2 <- exportISS(file = mdata_2, toexport= "WB")
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