Description Usage Format Slots Dataclass
The MolDiaISS class is a main object for all ISS based analysis. A MolDiaISS class object has the following slot
1 |
An object of class MolDiaISS
of length 1.
data
Main data for analysis
norm.data
Normalized data (log-scale).
scale.data
Scaled (default is z-scoring each gene) expression matrix; used for dimmensional reduction and heatmap visualization.
location
Insitu location of RCA cell location on X and Y co-ordinate.
gene
Name of genes in the data.
cluster
Cluster identification of all cells
cluster.marker
Marker gene of each cluster.
tsne.data
tSNE co-ordinate for data.
pca.data
List of stored dimmensional reductions
Data class section
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