ISS_readsSummary: Summary of ISS data and expression

Description Usage Arguments Value Author(s) Examples

View source: R/3.4_ISS_readsSummary.R

Description

Summary of ISS data and expression

Usage

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ISS_readsSummary(data, readlimit = 10, text.size = 6,
  intervel.dep = NULL, coexp = FALSE)

Arguments

data

Input data in class MolDiaISS. Output of readISS

readlimit

Total number of reads per cell to consider

text.size

Text size of Gene name.

intervel.dep

Vector of values between 0 and 100 , where you want to set interval. If one want to define the range like 0 to 5, 5 to 20, 20 to 40, 40 to 60, 60 to 100 then the input valuse will be c(5,20,40,60)

coexp

Same gene coexpression. Default is FALSE. TRUE means at least 2 reads.

Value

Summary of cells after reads delete.

Author(s)

Mohammad Tanvir Ahamed

Examples

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ex_data <- readISS(file = system.file("extdata", "CellBlobs_QT_0.35.csv", package="MolDia"),
                  cellid = "CellID", centX = "centroidX", cent = "centroidY")
res    <- ISS_readsSummary(data = ex_data, readlimit = 10, text.size = 10, intervel.dep = NULL, coexp = TRUE)

mashranga/MolDia documentation built on May 26, 2019, 9:36 a.m.