Description Usage Arguments Value Author(s) Examples
View source: R/3.4_ISS_readsSummary.R
Summary of ISS data and expression
1 2 | ISS_readsSummary(data, readlimit = 10, text.size = 6,
intervel.dep = NULL, coexp = FALSE)
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data |
Input data in class MolDiaISS. Output of readISS |
readlimit |
Total number of reads per cell to consider |
text.size |
Text size of Gene name. |
intervel.dep |
Vector of values between 0 and 100 , where you want to set interval. If one want to define the range like 0 to 5, 5 to 20, 20 to 40, 40 to 60, 60 to 100 then the input valuse will be c(5,20,40,60) |
coexp |
Same gene coexpression. Default is FALSE. TRUE means at least 2 reads. |
Summary of cells after reads delete.
Mohammad Tanvir Ahamed
1 2 3 | ex_data <- readISS(file = system.file("extdata", "CellBlobs_QT_0.35.csv", package="MolDia"),
cellid = "CellID", centX = "centroidX", cent = "centroidY")
res <- ISS_readsSummary(data = ex_data, readlimit = 10, text.size = 10, intervel.dep = NULL, coexp = TRUE)
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