ISS_readsSummary: Summary of ISS data and expression
In mashranga/MolDia: Single cell In-Situ sequencing (ISS) data analysis

Description Usage Arguments Value Author(s) Examples

Summary of ISS data and expression

1 2	ISS_readsSummary(data, readlimit = 10, text.size = 6, intervel.dep = NULL, coexp = FALSE)

`data`	Input data in class MolDiaISS. Output of readISS
`readlimit`	Total number of reads per cell to consider
`text.size`	Text size of Gene name.
`intervel.dep`	Vector of values between 0 and 100 , where you want to set interval. If one want to define the range like 0 to 5, 5 to 20, 20 to 40, 40 to 60, 60 to 100 then the input valuse will be c(5,20,40,60)
`coexp`	Same gene coexpression. Default is FALSE. TRUE means at least 2 reads.

Summary of cells after reads delete.

Mohammad Tanvir Ahamed

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ex_data <- readISS(file = system.file("extdata", "CellBlobs_QT_0.35.csv", package="MolDia"),
                  cellid = "CellID", centX = "centroidX", cent = "centroidY")
res    <- ISS_readsSummary(data = ex_data, readlimit = 10, text.size = 10, intervel.dep = NULL, coexp = TRUE)