Files in microbiome/microbiomeold
Tools for microbiome analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ROC.R
R/analysis.R
R/anova.R
R/bimodality.R
R/core.R
R/correlation.heatmap.R
R/cross.correlate.R
R/d3.R
R/data.documentation.R
R/densityplot.R
R/diversity.R
R/firstlib.R
R/htree.plot.R
R/internal.R
R/io.R
R/microbiome-package.R
R/phylo.R
R/phylo.barplot.R
R/prevalent.R
R/project.data.R
R/rda.R
R/similarity.R
R/stability.R
R/utils.R
R/variability.R
R/wilcoxon.R
README.md
data/peerj32.rda
inst/CITATION
inst/NEWS
inst/extdata/L1-frpa.tab
inst/extdata/L1-sum.tab
inst/extdata/L2-frpa.tab
inst/extdata/L2-sum.tab
inst/extdata/ProvasI-L2.tab
inst/extdata/ProvasI-Lipid.tab
inst/extdata/metadata.tab
inst/extdata/metadata.xls
inst/extdata/oligoprofile.tab
inst/extdata/phylogeny.filtered.tab
inst/extdata/phylogeny.full.tab
inst/extdata/species-frpa.tab
inst/extdata/species-sum.tab
inst/extras/build.sh
inst/extras/document.R
inst/unitTests/test_coefficient.of.bimodality.R
man/Bagged.RDA.Feature.Selection.Rd
man/Bagged.RDA.Rd
man/Core2D.Rd
man/GKtau.Rd
man/GetPhylogeny.Rd
man/PhylotypeRatios.Rd
man/PlotBaggedRDA.Rd
man/bootstrap.microbecount.Rd
man/bootstrap.microbes.Rd
man/calculate.hclust.Rd
man/check.anova.Rd
man/check_wilcoxon.Rd
man/cmat2table.Rd
man/coefficient.of.bimodality.Rd
man/convert4corrwscatter.Rd
man/core.sum.Rd
man/core.which.Rd
man/core_heatmap.Rd
man/correlation.heatmap.Rd
man/createCore.Rd
man/cross.correlate.Rd
man/densityplot.Rd
man/distance.matrix.Rd
man/estimate_stability.Rd
man/estimate_variability.Rd
man/get.probeset.Rd
man/htree.plot.Rd
man/impute.Rd
man/intermediate_stability.Rd
man/level1TOlevel0.Rd
man/level2TOlevel0.Rd
man/level2TOlevel1.Rd
man/levelmap.Rd
man/list.color.scales.Rd
man/list_prevalent_groups.Rd
man/lower.triangle.Rd
man/make.abundancy.table.Rd
man/matrix.padjust.Rd
man/microbiome-package.Rd
man/oligoTOhigher.Rd
man/peerj32.Rd
man/phylo.barplot.Rd
man/plot_cumulative.Rd
man/polish.phylogeny.info.Rd
man/prevalence.Rd
man/project.data.Rd
man/read.profiling.Rd
man/relative.abundance.Rd
man/retrieve.probesets.Rd
man/roc.Rd
man/roc.auc.Rd
man/roc.auc.matrix.Rd
man/roc.plot.Rd
man/species2levels.Rd
man/variability_individual.Rd
tests/runTests.R
