BasicPlot: BasicPlot:

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Plots activity data as points and average activity as lines

Usage

BasicPlot(
  genename,
  dataset,
  timelag = 0,
  method = "median",
  points = TRUE,
  print = TRUE,
  save = FALSE,
  path = NULL
)

Arguments

genename	The name of a gene intended for plotting. Must be a string.
dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
timelag	Shifts the plot to earlier in time.
method	How should the average activity for each time point be calculated? 'median' or 'mean'
points	Logical. If FALSE then each observation will not be plotted as points.
print	Logical. If TRUE renders plot in the plot viewer. Defaults to TRUE
save	Logical. If TRUE, saves plot to working directory. Defaults to FALSE.
path	The directory to be used for saving plots to. Uses the working directory by default. Not used if save = FALSE

Value

A ggplot2 object

Examples

BasicPlot('comp100026_c0_seq2',Laurasmappings)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.