CosinorAnalysisPar: CosinorAnalysisPar:

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Parallel Implementation of CosinorAnalysis. Fits cosinor models to transcriptomics data and plots the best-fitting models using ggplot2.

Usage

CosinorAnalysisPar(dataset, period = 24, nthreads = NULL, timelag = 6)

Arguments

dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
period	The period of rhythmicity which is being tested for. Defaults to 24 (circadian).
nthreads	The number of threads to be used for parallel computations. Defaults to the maximum number of threads available.
timelag	The value of time for which observations begin. Defaults to 6.

Value

Saves ggplot2 object(s).

Examples

cosinor.results <- CosinorAnalysisPar(Laurasmappings, nthreads = 2)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.