ClusterDatasetPlot: ClusterDatasetPlot :

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Plots the mean and error bars for all clusters across time

Usage

ClusterDatasetPlot(
  cluster.dataset,
  nthreads = NULL,
  print = TRUE,
  save = FALSE,
  path = "cluster_overview"
)

Arguments

cluster.dataset	A transcriptomics dataset where the final column details the cluster the gene belongs to. First column should be gene names. All remaining columns should be expression levels.
nthreads	Number of processor threads for the process. If not specified then the maximum number of logical cores are used.
print	Logical. If TRUE renders significant genes in the plot viewer. Defaults to TRUE
save	Logical. If TRUE, saves plots. Defaults to FALSE.
path	The directory to be used for saving plots to. Creates the directory if it doesn't already exist. Defaults to cluster_overview

Value

Prints or saves ggplot2 object(s).

Examples

pam.df <- PamClustering(Laurasmappings, k = 10, nthreads = 2)
ClusterDatasetPlot(pam.df, nthreads = 2)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.