CosinorPlot: CosinorPlot:

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Fits a cosinor model to a given gene in a given dataset and plots the model

Usage

CosinorPlot(
  genename,
  dataset,
  timelag = 6,
  period = 24,
  print = TRUE,
  save = FALSE
)

Arguments

genename	The name of a gene intended for plotting. Must be a string.
dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
timelag	The value of time for which observations begin. Defaults to 6.
period	The period of rhythmicity which is being tested for. Defaults to 24 (circadian).
print	Logical. If TRUE renders plot in the plot viewer. Defaults to TRUE
save	Logical. If TRUE, saves plot to working directory. Defaults to FALSE.

Value

Prints or saves ggplot2 object(s)

Examples

CosinorPlot('comp100000_c0_seq2', Laurasmappings )

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.