CosinorSignificantPlot: CosinorSignificantPlot :
In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description Usage Arguments Value Examples

Prints or saves the genes found to be most significant by CosinorAnalysis.

CosinorSignificantPlot(
  results,
  dataset,
  number = 10,
  period = 24,
  print = TRUE,
  save = FALSE,
  path = NULL
)

`results`	A dataframe generated by `CosinorAnalysis`.
`dataset`	A transcriptomics dataset which was used with `CosinorAnalysis` to generate the results dataframe. First columns should be gene names. All other columns should be expression levels.
`number`	The number of most significant genes printed or saved.
`period`	The period of rhythmicity which is being tested for. Defaults to 24 (circadian).
`print`	Logical. If TRUE renders significant genes in the plot viewer. Defaults to TRUE.
`save`	Logical. If TRUE, saves plots to working directory. Defaults to FALSE.
`path`	The path to be used for saving plots to. Only used if save is TRUE. If not specified then path will be based off name of the `results` object.

Prints or saves ggplot2 object(s).

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cosinor.results <- CosinorAnalysis(Laurasmappings)
CosinorSignificantPlot(cosinor.results, Laurasmappings, number = 15,
                        period = 24, save = TRUE, path = "example")