GeneSub: GeneSub

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Takes an object where the first column is genenames (IE a column of known Circadian genes) and subsets from a dataset containing activity for these genes

Usage

GeneSub(subdf, dataframe, nthreads = NULL)

Arguments

subdf	An object where the first column is gene names of interes (IE a column of known Circadian genes or genes found to be signicant)
dataframe	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
nthreads	Number of processor threads used. If not specifed then the maximum number of logical cores are used.

Examples

### Redundant example
newdf <- GeneSub(Laurasmappings[1:4,], Laurasmappings, nthreads = 2)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.