CosinorResidualPlot: CosinorResidualPlot

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Fits a cosinor model to a gene and plots the residuals.

Usage

CosinorResidualPlot(
  genename,
  dataset,
  timelag = 6,
  period = 24,
  print = TRUE,
  save = FALSE,
  path = NULL
)

Arguments

genename	The name of a gene intended for plotting. Must be a string.
dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
timelag	Shifts the plot to earlier in time.
period	The period of rhythmicity which is being tested for. Defaults to 24 (circadian).
print	Logical. If TRUE renders plot in the plot viewer. Defaults to TRUE
save	Logical. If TRUE, saves plot to working directory. Defaults to FALSE.
path	The directory to be used for saving plots to. Uses the working directory by default. Not used if save=FALSE

Value

Prints or saves ggplot2 object(s)

Examples

CosinorResidualPlot('comp100002_c0_seq2', Laurasmappings)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.