FindClusterMedian: FindClusterMedian
In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes
Description
Usage
Arguments
Examples
View source: R/cluster_functions.R
Description
Finds the center of a cluster by finding the median time value
for each gene and then calculates the median activity for each of these
time points across an entire cluster.
Usage
1
FindClusterMedian(cluster.no, cluster.dataset, nthreads = NULL)
Arguments
cluster.no
The number which identifies the cluster
cluster.dataset
A transcriptomics dataset where the final column
details the cluster the gene belongs to. First column should be gene names.
All remaining columns should be expression levels.
nthreads
Number of processor threads for the process. If not specifed
then the maximum number of logical cores are used.
Examples
1
2
pam.df <- PamClustering(Laurasmappings, k = 10, nthreads = 2)
FindClusterMedian(2, cluster.dataset = pam.df, nthreads = 2)
nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.
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Description Usage Arguments Examples
View source: R/cluster_functions.R
Description
Finds the center of a cluster by finding the median time value for each gene and then calculates the median activity for each of these time points across an entire cluster.
Usage
1 | FindClusterMedian(cluster.no, cluster.dataset, nthreads = NULL)
|
Arguments
cluster.no |
The number which identifies the cluster |
cluster.dataset |
A transcriptomics dataset where the final column details the cluster the gene belongs to. First column should be gene names. All remaining columns should be expression levels. |
nthreads |
Number of processor threads for the process. If not specifed then the maximum number of logical cores are used. |
Examples
1 2 | pam.df <- PamClustering(Laurasmappings, k = 10, nthreads = 2)
FindClusterMedian(2, cluster.dataset = pam.df, nthreads = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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