DatasetPlot: DatasetPlot:
In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Saves plots of all genes in a dataset. WARNING! Don't run on a large dataset! Intended for a filtered dataset

DatasetPlot(
  dataset,
  timelag = 0,
  method = "median",
  points = TRUE,
  nthreads = NULL,
  path = NULL
)

`dataset`	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
`timelag`	Shifts the plot to earlier in time.
`method`	How should the average activity for each time point be calculated? 'median' or 'mean'
`points`	Logical. If FALSE then each observation will not be plotted as points.
`nthreads`	Number of processor threads to be used for calculating the distance matrix. If not specifed then the maximum number of logical cores are used.
`path`	The directory to be used for saving plots to. Uses the name of the dataset object if this argument is not specified) Not used if save=FALSE