CommonSingletonFinder: CommonSingletonFinder

Description Usage Arguments Examples

View source: R/cluster_functions.R

Description

Finds the genes which belong to common singleton clusters in two different clustered datasets.

Usage

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CommonSingletonFinder(cluster.dataset1, cluster.dataset2)

Arguments

cluster.dataset1

A transcriptomics dataset where the final column details the cluster the gene belongs to. First column should be gene names. All remaining columns should be expression levels.

cluster.dataset2

A transcriptomics dataset in the same format as cluster.dataset1 but generated via a different clustering method or with different parameters.

Examples

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pam.df <- PamClustering(Laurasmappings, k = 10)
hclust.df <- AgglomClustering(Laurasmappings, k = 10)
common.singletons <- CommonSingletonFinder(pam.df, hclust.df)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.