FastaSub: FastaSub

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Creates a fasta file from only certain sequences in another fasta file

Usage

FastaSub(gene.names, fasta.file, save = TRUE, filename = NULL)

Arguments

gene.names	A character vector of gene names
fasta.file	A fasta file read in using seqinr
save	Logical. If TRUE then the newly created fasta file is saved to the working directory
filename	The filename to use for a saved fasta file

Value

A fasta file

Examples

main.fasta <- seqinr::read.fasta("fasta_file.fasta")
fasta.sub <- FastaSub(a.filter$sample, main.fasta, filename="reduced_fasta")

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.