AssessNodes: Assess Internal Nodes

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Method for automating assessment of tree splits over all internal nodes, or a provided list of internal nodes. Uses AssessSplit() for calculation of Out of Bag error (proxy for confidence in split).

Usage

AssessNodes(object, node.list, all.below = FALSE)

Arguments

object	Seurat object
node.list	List of internal nodes to assess and return
all.below	If single node provided in node.list, assess all splits below (and including) provided node.

Value

Returns the Out of Bag error for a random forest classifiers trained on each internal node split or each split provided in the node list.

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.