Description Usage Arguments Value
Test for genes whose expression value is strongly predictive of batch (based on ROC classification). Important note: Assumes that the 'batch' of each cell is assigned to the cell's identity class (will be improved in a future release)
1 2 |
object |
Seurat object |
idents.use |
Batch names to test |
genes.use |
Gene list to test |
auc.cutoff |
Minimum AUC needed to qualify as a 'batch gene' |
thresh.use |
Limit testing to genes which show, on average, at least X-fold difference (log-scale) in any one batch |
Returns a list of genes that are strongly correlated with batch.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.