GetCentroids: Get cell centroids
In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics
Description
Usage
Arguments
Details
Value
Description
Calculate the spatial mapping centroids for each cell, based on previously
calculated mapping probabilities for each bin.
Usage
1
GetCentroids(object, cells.use = NULL, get.exact = TRUE)
Arguments
object
Seurat object
cells.use
Cells to calculate centroids for (default is all cells)
get.exact
Get exact centroid (Default is TRUE). If FALSE, identify
the single closest bin.
Details
Currently, Seurat assumes that the tissue of interest has an 8x8 bin
structure. This will be broadened in a future release.
Value
Data frame containing the x and y coordinates for each cell
centroid.
nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.
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Description Usage Arguments Details Value
Description
Calculate the spatial mapping centroids for each cell, based on previously calculated mapping probabilities for each bin.
Usage
1 | GetCentroids(object, cells.use = NULL, get.exact = TRUE)
|
Arguments
object |
Seurat object |
cells.use |
Cells to calculate centroids for (default is all cells) |
get.exact |
Get exact centroid (Default is TRUE). If FALSE, identify the single closest bin. |
Details
Currently, Seurat assumes that the tissue of interest has an 8x8 bin structure. This will be broadened in a future release.
Value
Data frame containing the x and y coordinates for each cell centroid.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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