HeatmapNode: Node Heatmap

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Takes an object, a marker list (output of FindAllMarkers), and a node and plots a heatmap where genes are ordered vertically by the splits present in the [e-mail] slot.

Usage

HeatmapNode(object, marker.list, node = NULL, max.genes = 10, ...)

Arguments

object	Seurat object. Must have the cluster.tree slot filled (use BuildClusterTree)
marker.list	List of marker genes given from the FindAllMarkersNode function
node	Node in the cluster tree from which to start the plot, defaults to highest node in marker list
max.genes	Maximum number of genes to keep for each division
...	Additional parameters to pass to DoHeatmap

Value

Plots heatmap. No return value.

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.