CellPlot: Cell-cell scatter plot

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Creates a plot of scatter plot of genes across two single cells

Usage

CellPlot(object, cell1, cell2, gene.ids = NULL, col.use = "black",
  nrpoints.use = Inf, pch.use = 16, cex.use = 0.5, do.ident = FALSE,
  ...)

Arguments

object	Seurat object
cell1	Cell 1 name (can also be a number, representing the position in [e-mail])
cell2	Cell 2 name (can also be a number, representing the position in [e-mail])
gene.ids	Genes to plot (default, all genes)
col.use	Colors to use for the points
nrpoints.use	Parameter for smoothScatter
pch.use	Point symbol to use
cex.use	Point size
do.ident	FALSE by default. If TRUE, allows you to click on individual points to reveal gene names (hit ESC to stop)
...	Additional arguments to pass to smoothScatter

Value

No return value (plots a scatter plot)

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.