CellPlot: Cell-cell scatter plot

Description Usage Arguments Value

Description

Creates a plot of scatter plot of genes across two single cells

Usage

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CellPlot(object, cell1, cell2, gene.ids = NULL, col.use = "black",
  nrpoints.use = Inf, pch.use = 16, cex.use = 0.5, do.ident = FALSE,
  ...)

Arguments

object

Seurat object

cell1

Cell 1 name (can also be a number, representing the position in object@cell.names)

cell2

Cell 2 name (can also be a number, representing the position in object@cell.names)

gene.ids

Genes to plot (default, all genes)

col.use

Colors to use for the points

nrpoints.use

Parameter for smoothScatter

pch.use

Point symbol to use

cex.use

Point size

do.ident

FALSE by default. If TRUE, allows you to click on individual points to reveal gene names (hit ESC to stop)

...

Additional arguments to pass to smoothScatter

Value

No return value (plots a scatter plot)


nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.