Description Usage Arguments Value
Creates a scatter plot of two features (typically gene expression), across a set of single cells. Cells are colored by their identity class.
1 2 3 |
object |
Seurat object |
gene1 |
First feature to plot. Typically gene expression but can also be metrics, PC scores, etc. - anything that can be retreived with FetchData |
gene2 |
Second feature to plot. |
cell.ids |
Cells to include on the scatter plot. |
col.use |
Colors to use for identity class plotting. |
pch.use |
Pch argument for plotting |
cex.use |
Cex argument for plotting |
use.imputed |
Use imputed values for gene expression (Default is FALSE) |
do.ident |
False by default. If TRUE, |
do.spline |
Add a spline (currently hardwired to df=4, to be improved) |
spline.span |
spline span in loess function call |
... |
Additional arguments to be passed to plot. |
No return, only graphical output
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