Description Usage Arguments Value
Method for determining confidence in specific bifurcations in the cluster tree. Use the Out of Bag (OOB) error of a random forest classifier to judge confidence.
1 | AssessSplit(object, node, cluster1, cluster2, print.output = T, ...)
|
object |
Seurat object |
node |
Node in the cluster tree in question |
cluster1 |
First cluster to compare |
cluster2 |
Second cluster to compare |
print.output |
Print the OOB error for the classifier |
... |
additional parameters to pass to BuildRFClassifier |
Returns the Out of Bag error for a random forest classifier trained on the split from the given node
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