InitialMapping: Infer spatial origins for single cells

Description Usage Arguments Value

Description

Probabilistically maps single cells based on (imputed) gene expression estimates, a set of mixture models, and an in situ spatial reference map.

Usage

1
InitialMapping(object, cells.use = NULL)

Arguments

object

Seurat object

cells.use

Which cells to map

Value

Seurat object, where mapping probabilities for each bin are stored in object@final.prob


nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.