AverageExpression: Averaged gene expression by identity class

In nukappa/seurat_v2: Seurat : R toolkit for single cell genomics

Description

Returns gene expression for an 'average' single cell in each identity class

Usage

AverageExpression(object, genes.use = NULL, return.seurat = F,
  add.ident = NULL, ...)

Arguments

object	Seurat object
genes.use	Genes to analyze. Default is all genes.
return.seurat	Whether to return the data as a Seurat object. Default is false.
add.ident	Add identity label to class
...	Arguments to be passed to methods such as Setup

Details

Output is in log-space, but averaging is done in non-log space.

Value

Returns a matrix with genes as rows, identity classes as columns.

nukappa/seurat_v2 documentation built on May 24, 2019, 9:57 a.m.