Files in ocbe-uio/CellMigRation

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

NEWS.md R/all_classes.R R/all_extra.R R/all_functions_v8.R R/all_internal_v3.R R/all_methods_v3.R README.Rmd README.md Shinyapp/server.R Shinyapp/ui.R inst/unitTests/test_cellmigRation_core.R inst/unitTests/test_funcion_examples.R man/AddDimension.Rd man/CellMig-class.Rd man/CellMigPCA.Rd man/CellMigPCAclust.Rd man/CellMigPCAclustALL.Rd man/CellTracker.Rd man/CellTrackerMainLoop.Rd man/CentroidArray.Rd man/CentroidValidation.Rd man/ComputeTracksStats.Rd man/DetectRadii.Rd man/DiAutoCor.Rd man/DiRatio.Rd man/DiRatioPlot.Rd man/EstimateDiameterRange.Rd man/FMI.Rd man/FianlizeOptiParams.Rd man/FilterTrackedCells.Rd man/FinRes.Rd man/ForwardMigration.Rd man/GenAllCombos.Rd man/LinearConv2.Rd man/LoadTiff.Rd man/MSD.Rd man/MakeHypercube.Rd man/MigrationStats.Rd man/NextOdd.Rd man/NonParallel4OptimizeParams.Rd man/NonParallelTrackLoop.Rd man/OptimizeParams.Rd man/OptimizeParamsMainLoop.Rd man/Parallel4OptimizeParams.Rd man/ParallelTrackLoop.Rd man/PerAndSpeed.Rd man/PlotTracksSeparately.Rd man/PostProcessTracking.Rd man/Prep4OptimizeParams.Rd man/ThreeConditions.Rd man/TrackCellsDataset.Rd man/TrajectoryDataset.Rd man/ValidateTrackingArgs.Rd man/VeAutoCor.Rd man/VisualizeCntr.Rd man/VisualizeImg.Rd man/VisualizeStackCentroids.Rd man/WSADataset.Rd man/aggregateFR.Rd man/aggregateTrackedCells.Rd man/bpass.Rd man/cellmigRation-package.Rd man/circshift.Rd man/cntrd.Rd man/fixDA.Rd man/fixExpName.Rd man/fixFM1.Rd man/fixFM2.Rd man/fixFM3.Rd man/fixFM4.Rd man/fixFM5.Rd man/fixFM6.Rd man/fixID1.Rd man/fixID2.Rd man/fixID3.Rd man/fixID4.Rd man/fixID5.Rd man/fixID6.Rd man/fixMSD.Rd man/fixPER1.Rd man/fixPER2.Rd man/fixPER3.Rd man/getAvailableAggrMetrics.Rd man/getCellImages.Rd man/getCellMigSlot.Rd man/getCellTrackMeta.Rd man/getCellTrackStats.Rd man/getCellTracks.Rd man/getCellsMeta.Rd man/getCellsStats.Rd man/getDACtable.Rd man/getDiRatio.Rd man/getFMItable.Rd man/getForMigtable.Rd man/getImageCentroids.Rd man/getImageStacks.Rd man/getMSDtable.Rd man/getOptimizedParameters.Rd man/getOptimizedParams.Rd man/getPerAndSpeed.Rd man/getPopulationStats.Rd man/getProcessedImages.Rd man/getProcessingStatus.Rd man/getResults.Rd man/getTracks.Rd man/getVACtable.Rd man/initializeTrackParams.Rd man/innerBondRaster.Rd man/internalPermutation.Rd man/matfix.Rd man/nontrivialBondTracking.Rd man/pkfnd.Rd man/plot3DAllTracks.Rd man/plot3DTracks.Rd man/plotAllTracks.Rd man/plotSampleTracks.Rd man/preProcCellMig.Rd man/rmPreProcessing.Rd man/runTrackingPermutation.Rd man/setAnalyticParams.Rd man/setCellMigSlot.Rd man/setCellTracks.Rd man/setCellsMeta.Rd man/setExpName.Rd man/setOptimizedParams.Rd man/setProcessedImages.Rd man/setProcessingStatus.Rd man/setTrackedCellsMeta.Rd man/setTrackedCentroids.Rd man/setTrackedPositions.Rd man/setTrackingStats.Rd man/sinkAway.Rd man/subNetworkTracking.Rd man/track.Rd man/trackHypercubeBuild.Rd man/trackSlideProcessing.Rd man/trackSlideWrapUp.Rd man/trackedCells-class.Rd man/trivialBondRaster.Rd man/trivialBondTracking.Rd man/visualizeCellTracks.Rd man/visualizeTrcks.Rd man/warnMessage.Rd man/wsaPreProcessing.Rd tests/runTests.R vignettes/cellmigRation.Rmd