API for steinbaugh/DESeqAnalysis
DESeq2 Analysis Utilities

Global functions
DESeqAnalysis Man page
DESeqAnalysis-class Man page
DESeqAnalysisList Man page Source code
DESeqAnalysisList-class Man page
addIsDECol Source code
alphaSummary Man page
alphaSummary,DESeqDataSet-method Man page
as Man page
coerce Man page
coerce,DESeqAnalysis,DESeqDataSet-method Man page
coerce,DESeqAnalysis,DESeqResults-method Man page
coerce,DESeqAnalysis,DESeqTransform-method Man page
coerceResultsToList Source code
contrastName Man page
contrastName,DESeqAnalysis-method Man page
contrastName,DESeqResults-method Man page
contrastNames Source code
contrastSamples Man page
contrastSamples,DESeqAnalysis-method Man page
ddsMsg Source code
deg Man page
deg,DESeqAnalysis-method Man page
deg,DESeqResults-method Man page
deseq Man page
export Man page
export,DESeqAnalysis-method Man page
exportDESeqDataSet Source code
exportDESeqResultsList Source code
exportDESeqTransform Source code
exportResultsTables Source code
lfcShrinkType Source code
markdown Man page
markdown,DESeqAnalysis-method Man page
matchResults Source code
params Man page
plotCounts Man page
plotCounts,DESeqAnalysis-method Man page
plotDEGHeatmap Man page
plotDEGHeatmap,DESeqAnalysis-method Man page
plotDEGHeatmap,DESeqResults-method Man page
plotDEGPCA Man page
plotDEGPCA,DESeqAnalysis-method Man page
plotDEGPCA,DESeqResults-method Man page
plotMA Man page
plotMA,DESeqAnalysis-method Man page
plotMA,DESeqResults-method Man page
plotMeanAverage Man page Source code
plotVolcano Man page
plotVolcano,DESeqAnalysis-method Man page
plotVolcano,DESeqResults-method Man page
results Man page
results,DESeqAnalysis-method Man page
results,DESeqDataSet-method Man page
resultsNames Man page
resultsNames,DESeqAnalysis-method Man page
resultsNames,DESeqDataSet-method Man page
resultsTables Man page
resultsTables,DESeqAnalysis-method Man page
resultsTables,DESeqResults-method Man page
sampleData Man page
sampleData,DESeqAnalysis-method Man page
show Man page
show,DESeqAnalysis-method Man page
topTables Man page
topTables,DESeqAnalysis-method Man page
transformCountsAxisLabel Source code
transformType Source code
updateObject Man page
updateObject,DESeqAnalysis-method Man page
steinbaugh/DESeqAnalysis documentation built on March 22, 2019, 5:51 p.m.