deg | R Documentation |
Differentially expressed genes
deg(object, ...) ## S4 method for signature 'DESeqAnalysis' deg(object, i, direction = c("both", "up", "down"), quiet = FALSE) ## S4 method for signature 'DESeqResults' deg( object, direction = c("both", "up", "down"), alphaThreshold = NULL, baseMeanThreshold = NULL, lfcThreshold = NULL, quiet = FALSE )
object |
Object. |
i |
Indices specifying elements to extract or replace. Indices are For more information: help(topic = "Extract", package = "base") |
direction |
|
quiet |
|
alphaThreshold |
|
baseMeanThreshold |
|
lfcThreshold |
|
... |
Additional arguments. |
character
.
Gene identifiers.
Updated 2022-05-18.
data(deseq) ## DESeqAnalysis ==== x <- deg(deseq, i = 1L) head(x)
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