baseMeanThreshold: Base mean threshold

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Base mean threshold

Description

Base mean threshold

Usage

baseMeanThreshold(object, ...)
baseMeanThreshold(object, ...) <- value

## S4 method for signature 'DESeqAnalysis'
baseMeanThreshold(object)

## S4 method for signature 'DESeqAnalysisList'
baseMeanThreshold(object)

## S4 method for signature 'DESeqResults'
baseMeanThreshold(object)

## S4 method for signature 'DESeqResultsList'
baseMeanThreshold(object)

## S4 replacement method for signature 'DESeqAnalysis,numeric'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysis,NULL'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,numeric'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,NULL'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqResults,numeric'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqResults,NULL'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqResultsList,numeric'
baseMeanThreshold(object) <- value

## S4 replacement method for signature 'DESeqResultsList,NULL'
baseMeanThreshold(object) <- value

Arguments

object	Object.
value	Value to assign.
...	Additional arguments.

Value

numeric(1). Base mean cutoff level.

Note

Updated 2021-03-12.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
baseMeanThreshold(object) <- 100L
baseMeanThreshold(object)

steinbaugh/DESeqAnalysis documentation built on June 9, 2025, 7:56 a.m.