lfcThreshold: Log2 fold change threshold

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Log2 fold change threshold

Description

Log2 fold change threshold

Usage

lfcThreshold(object, ...)
lfcThreshold(object, ...) <- value

## S4 method for signature 'DESeqAnalysis'
lfcThreshold(object)

## S4 method for signature 'DESeqAnalysisList'
lfcThreshold(object)

## S4 method for signature 'DESeqResults'
lfcThreshold(object)

## S4 method for signature 'DESeqResultsList'
lfcThreshold(object)

## S4 replacement method for signature 'DESeqAnalysis,numeric'
lfcThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysis,'NULL''
lfcThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,numeric'
lfcThreshold(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,'NULL''
lfcThreshold(object) <- value

## S4 replacement method for signature 'DESeqResults,numeric'
lfcThreshold(object) <- value

## S4 replacement method for signature 'DESeqResultsList,numeric'
lfcThreshold(object) <- value

Arguments

object	Object.
value	Value to assign.
...	Additional arguments.

Details

Assumes 0 by default if unset.

Value

numeric(1).

Note

Updated 2021-03-12.

Examples

data(deseq)

## DESeqAnalysis ====
lfcThreshold(deseq) <- 0.2
lfcThreshold(deseq)

steinbaugh/DESeqAnalysis documentation built on April 1, 2024, 8:30 a.m.