Files in steinbaugh/DESeqAnalysis
DESeq2 Analysis Utilities

.Rbuildignore
.gitignore
.lintr
.travis.yml
DESCRIPTION
DESeqAnalysis.Rproj
LICENSE
NAMESPACE
NEWS
NEWS.md R/AllClasses.R R/DESeq2-internal.R R/DESeqAnalysis.R R/DESeqAnalysisList.R R/alphaSummary-methods.R R/as-methods.R R/contrastName-methods.R R/contrastSamples-methods.R R/data.R R/deg-methods.R R/export-methods.R R/globals.R R/imports.R R/markdown-methods.R R/matchResults-internal.R R/package.R R/params.R R/plotCounts-methods.R R/plotDEGHeatmap-methods.R R/plotDEGPCA-methods.R R/plotMA-methods.R R/plotVolcano-methods.R R/results-methods.R R/resultsNames-methods.R R/resultsTables-methods.R R/sampleData-methods.R R/show-methods.R R/topTables-methods.R R/updateObject-methods.R README.md
_pkgdown.yml
appveyor.yml
data-raw/deseq.R
data/deseq.rda
docs/LICENSE-text.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DESeqAnalysis-class.html
docs/reference/DESeqAnalysis-package.html
docs/reference/DESeqAnalysisList-class.html
docs/reference/alphaSummary.html
docs/reference/as.html
docs/reference/contrastName.html
docs/reference/contrastSamples.html
docs/reference/deg.html
docs/reference/deseq.html
docs/reference/export.html
docs/reference/index.html
docs/reference/markdown.html
docs/reference/params.html
docs/reference/plotCounts-1.png
docs/reference/plotCounts-2.png
docs/reference/plotCounts.html
docs/reference/plotDEGHeatmap-1.png
docs/reference/plotDEGHeatmap.html
docs/reference/plotDEGPCA-1.png
docs/reference/plotDEGPCA.html
docs/reference/plotMA-1.png
docs/reference/plotMA-2.png
docs/reference/plotMA-3.png
docs/reference/plotMA-4.png
docs/reference/plotMA-5.png
docs/reference/plotMA-6.png
docs/reference/plotMA.html
docs/reference/plotVolcano-1.png
docs/reference/plotVolcano-2.png
docs/reference/plotVolcano-3.png
docs/reference/plotVolcano-4.png
docs/reference/plotVolcano-5.png
docs/reference/plotVolcano-6.png
docs/reference/plotVolcano.html
docs/reference/reexports.html
docs/reference/results.html
docs/reference/resultsNames.html
docs/reference/resultsTables.html
docs/reference/sampleData.html
docs/reference/show.html
docs/reference/topTables.html
docs/reference/updateObject.html
inst/rmarkdown/differential_expression/skeleton/skeleton.Rmd
inst/rmarkdown/differential_expression/template.yaml
man/DESeqAnalysis-class.Rd man/DESeqAnalysis-package.Rd man/DESeqAnalysisList-class.Rd man/alphaSummary.Rd man/as.Rd man/contrastName.Rd man/contrastSamples.Rd man/deg.Rd man/deseq.Rd man/export.Rd man/markdown.Rd man/params.Rd man/plotCounts.Rd man/plotDEGHeatmap.Rd man/plotDEGPCA.Rd man/plotMA.Rd man/plotVolcano.Rd man/reexports.Rd man/results.Rd man/resultsNames.Rd man/resultsTables.Rd man/sampleData.Rd man/show.Rd man/topTables.Rd man/updateObject.Rd
pkgdown/extra.css
tests/testthat.R tests/testthat/test_differential_expression.R tests/testthat/test_markdown.R
steinbaugh/DESeqAnalysis documentation built on March 22, 2019, 5:51 p.m.