degPerContrast: Base mean threshold

Description Usage Arguments Value Note Examples

Description

Base mean threshold

Usage

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degPerContrast(object, ...)

## S4 method for signature 'DESeqAnalysis'
degPerContrast(
  object,
  i = NULL,
  direction = c("both", "up", "down"),
  return = c("matrix", "list"),
  ...
)

Arguments

object

Object.

i

character, numeric, or NULL. Names or range of results. If set NULL, include all results.

direction

character(1). Include "both", "up", or "down" directions.

return

character(1). Return type. Uses match.arg() internally and defaults to the first argument in the character vector.

...

Passthrough arguments to deg().

Value

Note

Updated 2020-09-21.

Examples

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data(deseq)

## DESeqAnalysis ====
degPerContrast(deseq)

steinbaugh/DESeqAnalysis documentation built on Oct. 15, 2020, 2:02 a.m.