lfcShrink: Shrink log2 fold changes

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Shrink log2 fold changes

Description

Shrink log2 fold changes

Usage

lfcShrink(object, ...)
lfcShrink(object, ...) <- value

## S4 method for signature 'DESeqAnalysis'
lfcShrink(object)

## S4 method for signature 'DESeqAnalysisList'
lfcShrink(object)

## S4 method for signature 'DESeqDataSet'
lfcShrink(object, ...)

## S4 replacement method for signature 'DESeqAnalysis,logical'
lfcShrink(object) <- value

## S4 replacement method for signature 'DESeqAnalysisList,logical'
lfcShrink(object) <- value

Arguments

object	Object.
...	Additional arguments.
value	Value to assign.

Value

Varies, depending on object class.

Note

Updated 2021-06-28.

See Also

DESeq2::lfcShrink().

Examples

data(deseq)

## DESeqAnalysis ====
lfcShrink(deseq)

steinbaugh/DESeqAnalysis documentation built on June 9, 2025, 7:56 a.m.