lfcShrinkType: Shrunken log2 fold change (LFC) type

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Shrunken log2 fold change (LFC) type

Description

Shrunken log2 fold change (LFC) type

Usage

lfcShrinkType(object, ...)

## S4 method for signature 'DESeqAnalysis'
lfcShrinkType(object)

## S4 method for signature 'DESeqAnalysisList'
lfcShrinkType(object)

## S4 method for signature 'DESeqResults'
lfcShrinkType(object)

## S4 method for signature 'DESeqResultsList'
lfcShrinkType(object)

Arguments

object	Object.
...	Additional arguments.

Value

character(1) or NULL. Name of adaptive shrinkage method applied (e.g. "apeglm" or "ashr").

Note

Updated 2021-03-12.

See Also

DESeq2::lfcShrink().

Examples

data(deseq)

## DESeqAnalysis ====
lfcShrinkType(deseq)

steinbaugh/DESeqAnalysis documentation built on June 9, 2025, 7:56 a.m.