export: Export

Description Usage Arguments Value Note Examples

Description

Export data out of R and write to disk.

Usage

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export(object, ...)

## S4 method for signature 'DESeqDataSet'
export(object, name = NULL, dir = ".", compress = FALSE)

## S4 method for signature 'DESeqAnalysis'
export(object, name = NULL, dir = ".", compress = FALSE)

Arguments

object

Object.

name

character(1). Name to use on disk. If NULL, will use the name of the object instead.

dir

character(1). Directory path.

compress

logical(1). Apply gzip compression to all files.

...

Additional arguments.

Value

Invisibily return file paths, either as list or character.

Note

Size-factor normalized coutns and FPKM values are calculated on the fly and exported automatically.

Updated 2020-08-04.

Examples

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data(deseq)

## DESeqAnalysis ====
export(deseq, dir = "example")

## Clean up.
unlink("example", recursive = TRUE)

steinbaugh/DESeqAnalysis documentation built on Oct. 15, 2020, 2:02 a.m.