export: Export

In steinbaugh/DESeqAnalysis: DESeq2 Analysis Utilities

Description

Export data out of R and write to disk.

Usage

export(object, ...)

## S4 method for signature 'DESeqDataSet'
export(object, name = NULL, dir = ".", compress = FALSE)

## S4 method for signature 'DESeqAnalysis'
export(object, name = NULL, dir = ".", compress = FALSE)

Arguments

object	Object.
name	character(1). Name to use on disk. If NULL, will use the name of the object instead.
dir	character(1). Directory path.
compress	logical(1). Apply gzip compression to all files.
...	Additional arguments.

Value

Invisibily return file paths, either as list or character.

Note

Size-factor normalized coutns and FPKM values are calculated on the fly and exported automatically.

Updated 2020-08-04.

Examples

data(deseq)

## DESeqAnalysis ====
export(deseq, dir = "example")

## Clean up.
unlink("example", recursive = TRUE)

steinbaugh/DESeqAnalysis documentation built on Oct. 15, 2020, 2:02 a.m.