export: Export data from R

In steinbaugh/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Export data from R

Description

Export data from R

Usage

export(object, con, ...)

## S4 method for signature 'DESeqAnalysis,character'
export(object, con, compress = FALSE, overwrite = TRUE, quiet = FALSE)

## S4 method for signature 'DESeqDataSet,character'
export(object, con, compress = FALSE, overwrite = TRUE, quiet = FALSE)

Arguments

object	Object.
con	character(1). Directory path.
compress	logical(1). Apply gzip compression to all files.
overwrite	logical(1). Overwrite existing file on disk.
quiet	logical(1). Perform command quietly, suppressing messages.
...	Additional arguments.

Details

Size-factor normalized coutns and FPKM values are calculated on the fly and exported automatically.

Value

Invisible character or list of file paths.

Note

Updated 2022-09-13.

Examples

data(deseq)

## DESeqAnalysis ====
con <- AcidBase::tempdir2()
x <- export(deseq, con = con)
print(x)
AcidBase::unlink2(con)

steinbaugh/DESeqAnalysis documentation built on June 9, 2025, 7:56 a.m.