The MetaCell R package facilitates analysis of single cell RNAseq UMI matrices by computing partitions of a cell similarity graph into small (~20200 typically) homogeneous groups of cells which are defined as metacells (MCs). The derived MCs are then used for building different representations of the data, allowing matrix or 2D graph visualization forming a basis for analysis of cell types, subtypes, transcriptional gradients, cellcycle variation, gene modules and their regulatory models and more. More details on the usage of the MetaCell pipeline is available in the package vignettes, and in papers using it.
Package details 


Maintainer  
License  MIT + file LICENSE 
Version  0.3.5 
URL  https://github.com/tanaylab/metacell 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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